Exact Calculation of Permutational Distributions for Two Dependent Samples I

A simple Fortran subroutine is given for the calculation of permutational distributions. Important special cases are Fisher's randomization test, the Wilcoxon signed ranks test and the sign test. The algorithm works in polynomial time. Thus it can be used even for micro-computers within justifiable time limits.     

Exact Test Procedures for Generalized Kendall Correlation Coefficients

An exact test of KENDALL'S tau is presented, useful in small samples when the asymptotic test may not be adequate. The procedure is proposed especially for situations when ties and/or censored observations are present in the variables to be analyzed by KENDALL'S tau. The paper describes generalizations of the procedure, presents calculated examples and offers a computer program, which facilitates the usage of the proposed procedure.     

Debating the greening vs. browning of the North American boreal forest: differences between satellite datasets

A number of remote sensing studies have evaluated the temporal trends of the normalized difference vegetation index (NDVI or vegetation greenness) in the North American boreal forest during the last two decades, often getting quite different results. To examine the effect that the use of different datasets might be having on the estimated trends, we compared the temporal trends of recently burned and unburned sites of boreal forest in central Canada calculated from two datasets: the Global Inventory, Monitoring, and Modeling Studies (GIMMS), which is the most commonly used 8 km dataset, and a new 1 km dataset developed by the Canadian Centre for Remote Sensing (CCRS). We compared the NDVI trends of both datasets along a fire severity gradient in order to evaluate the variance in regeneration rates. Temporal trends were calculated using the seasonal Mann–Kendall trend test, a rank‐based, nonparametric test, which is robust against seasonality, nonnormality, heteroscedasticity, missing values, and serial dependence. The results showed contrasting NDVI trends between the CCRS and the GIMMS datasets. The CCRS dataset showed NDVI increases in all recently burned sites and in 50% of the unburned sites. Surprisingly, the GIMMS dataset did not capture the NDVI recovery in most burned sites and even showed NDVI declines in some burned sites one decade after fire. Between 50% and 75% of GIMMS pixels showed NDVI decreases in the unburned forest compared with <1% of CCRS pixels. Being the most broadly used dataset for monitoring ecosystem and carbon balance changes, the bias towards negative trends in the GIMMS dataset in the North American boreal forest has broad implications for the evaluation of vegetation and carbon dynamics in this region and globally.     

The development of the critical theory of evolution: The scientific career of Wolfgang F. Gutmann

Summary The critical theory of evolution was developed by a group of scientists working together with Wolfgang F. Gutmann at the Senckenberg-Research-Institute in Frankfurt am Main. Gutmann worked at Senckenberg for 37 years. In this time he presented 247 contributions which are distributed over 47 periodicals and books. The ideas that were developed by Gutmann and his colleagues were innovative and pathbreaking for morphology and evolutionary biology. The large number of his morphological publications is indicative of the wide field that was opened up by the concepts of constructional morphology. As some of his colleagues have suggested, constructional morphology as an engineering approach to the study of organisms (i. e., engineering morphology) may replace the traditional concepts of morphology and anatomy and provides the observational base for the historical reconstruction of evolutionary pathways. Constructional morphology as a quasi-engineering approach can be the morphological pendant to the contemporary molecular approaches to biology, as it can provide the necessary morphological basis for the interpretation of the results of molecular studies in the light of evolution.     

How to Generate Student Excitement in Science

The Draw-an-Archaeologist Test (DART) is an easy way to elieit students' conceptions about archaeology and can be adapted to other subject matter. When implemented as the first activity of an archaeology unit, it provides a starting point for introducing archaeology and addressing students' misconceptions about it. In this drawing activity, students are asked to describe not only what archaeologists do, but who they are in terms of gender and ethnicities. This activity can be used to generate a discussion on equity and to access differences between genders and ethnicities, which fulfills one of the national science education standards for the history and nature of science.     

Prediction of nonlinear elastic behaviour of vaginal tissue: experimental results and model formulation

The mechanical properties of the vaginal tissue need to be characterised to perform accurate simulations of prolapse and other pelvic disorders that commonly affect women. This is also a fundamental step towards the improvement of therapeutic techniques such as surgery. Issues like the efficiency of using autologous tissue in pelvic reconstruction may be addressed. The goal of this study was to characterise the elastic behaviour of vaginal tissue. For this purpose, prolapsed vaginal tissue from eight different post-menopausal patients, excised during prolapse corrective surgery, was mechanically tested. The mechanical testing of vaginal tissue, consisting of uniaxial tension tests performed along the longitudinal axis of the vagina, revealed the nonlinear mechanical behaviour of the tissue. The material model parameters were fit to the experimental data using the Levenberg–Marquardt optimisation algorithm. All the curve fittings showed a good agreement between experimental and theoretical results, evidenced by R ² values close to 1 and by very low ? values.     

News from the Biological Stain Commission No. 12

Abstract

In this 12^th issue of News from the Biological Stain Commission (BSC) under the heading of Regulatory affairs, the Biological Stain Commission’s International Affairs Committee presents information from the meetings of ISO/TC 212/WG 1 Quality and competence in the medical laboratory and ISO/TC 212/WG 3 In vitro diagnostic products both held on 2 – 3 June 2010, plus information on the second plenary meeting of ISO/TC 212 Clinical laboratory testing and in vitro diagnostic test systems held on 4 June 2010. All meetings took place in Seoul, Republic of Korea. Finally, information is provided concerning the 25^th meeting of CEN/TC 140 In vitro diagnostic medical devices held on 23 June 2010 in Berlin, Germany.     

Influence of surface anesthesia on the pressure pain threshold measured with different-sized probes

Transcutaneous pressure with pressure probes of arbitrary diameters have been commonly used for measuring the threshold and magnitude of muscle pain, yet this procedure lacks scientific validation. To examine the valid probe dimensions, we conducted physiological experiments using 34 human subjects. Pin-prick pain, pressure pain threshold (PPT) to pressure probes of various diameters, heat pain threshold, and electrical pain threshold of deep tissues were measured before and after application of surface lidocaine anesthesia to the skin surface over the brachioradial muscle in a double-blinded manner. The anesthesia neither affected PPT with larger probes (diameters: 1.6 and 15?mm) nor increased electric pain threshold of deep structures, whereas it diminished pain count in pin-prick test and PPT with a 1.0?mm diameter probe, suggesting that mechanical pain thresholds measured with 1.6 and 15?mm probes reflect the pain threshold of deep tissues, possibly muscle. Pain thresholds to heat did not change after application of the anesthesia. These results suggest that larger pressure probes can give a better estimation of muscular pain threshold.     

Small Sample Properties of Rank Tests for Incomplete Unbalanced Designs

A rank test is presented for analysis of incomplete unbalanced designs, i.e. for designs that may have been originally planned to be either balanced or unbalanced and where some observations may be missing at random. This test is a modification of the procedure of Benard and van El-teren (1953) based on a generalization of block weights proposed by Prentice (1979). It is compared with the tests of Haux, Schumacher, and Weckesser (1984) and Rai (1987). For incomplete or unbalanced designs with more than two treatments the quadratic forms proposed by these authors are proven to be invalid for small sample sizes, except for special cases. A necessary condition is given for test statistics to be valid also for small samples.     

distruct: a program for the graphical display of population structure

In analysis of multilocus genotypes from structured populations, individual coefficients of membership in subpopulations are often estimated using programs such as structure . distruct provides a general method for visualizing these estimated membership coefficients. Subpopulations are represented as colours, and individuals are depicted as bars partitioned into coloured segments that correspond to membership coefficients in the subgroups. distruct , available at http://www.cmb.usc.edu/~noahr/distruct.html , can also be used to display subpopulation assignment probabilities when individuals are assumed to have ancestry in only one group.